Tutorials: Analysis Tools
In this section, we will introduce the newly developed workflows that can be used in PySoftK for analysing polymers and other soft-matter systems. Tutorials for a new set of functionalities like estimation of densities, detection of ring-ring stacking enviorements, contact analysis have been developed.
- Tutorial on the usage of contacts
- Tutorial on the usage of ecc_micelle
- Tutorial on the usage of intrinsic_density_micelle tool
- Tutorial on the usage of micelle_whole tool
- Tutorial on the usage of rgyr_micelle
- Case example of MDAnalysis vs Pysoftk’s rgyr_micelle
- Tutorial on the usage of RSA tool
- Tutorial on the usage of RSA tool
- Tutorial on the usage of SCP tool
- Tutorial on the usage of hydration
- Tutorial on the usage of spherical_density tool